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Reference

RapiClear CS

Human

1.Cartmell SC et al. Multimodal characterization of the human nucleus accumbens. Neuroimage (2019). https://doi.org/10.1016/j.neuroimage.2019.05.019

2.Chen Y et al. Three-dimensional imaging and quantitative analysis in CLARITY processed breast cancer tissues. Sci Rep (2019). https://doi.org/10.1038/s41598-019-41957-w

3.Hsueh B et al. Pathways to clinical CLARITY: volumetric analysis of irregular, soft, and heterogeneous tissues in development and disease. Sci Rep (2017). https://doi.org/10.1038/s41598-017-05614-4

Macaca mulatta

1.Trautmann EM et al. Dendritic calcium signals in rhesus macaque motor cortex drive an optical brain-computer interface. Nat Commun (2021). https://doi.org/10.1038/s41467-021-23884-5

Mouse

1.Hsueh B, et al. Cardiogenic control of affective behavioural state. Nature (2023). https://doi.org/10.1038/s41586-023-05748-8

2.Refaeli R, et al. Engram stability and maturation during systems consolidation. Curr Biol (2023). https://doi.org/10.1016/j.cub.2023.07.042

3.Pang Z, et al. In situ identification of cellular drug targets in mammalian tissue. Cell (2022). https://doi.org/10.1016/j.cell.2022.03.040

4.Pang Z, et al. A protocol to visualize on-target specific drug binding in mammalian tissue with cellular resolution using tissue clearing and click chemistry. STAR Protoc (2022). https://doi.org/10.1016/j.xpro.2022.101778

5.Rosin JM et al. A subpopulation of embryonic microglia respond to maternal stress and influence nearby neural progenitors. Dev Cell (2021). https://doi.org/10.1016/j.devcel.2021.03.018

6.Yeh HY et al. Longitudinal intravital imaging nerve degeneration and sprouting in the toes of spared nerve injured mice. J Comp Neurol (2021). https://doi.org/10.1002/cne.25162

7.Chi HH et al. An Index Combining Lost and Remaining Nerve Fibers Correlates with Pain Hypersensitivity in Mice. Cells (2020). https://doi.org/10.3390/cells9112414

8.Goubran M et al. Multimodal image registration and connectivity analysis for integration of connectomic data from microscopy to MRI. Nat Commun (2019). https://doi.org/10.1038/s41467-019-13374-0

9.Castello M et al. A robust and versatile platform for image scanning microscopy enabling super-resolution FLIM. Nat Methods (2019). https://doi.org/10.1038/s41592-018-0291-9

10.Tan Y et al. Streamlining volumetric multi-channel image cytometry using hue-saturation-brightness-based surface creation. Commun Biol (2018).  https://doi.org/10.1038/s42003-018-0139-y

11.Chakraborty S et al. Saturated two-photon excitation fluorescence microscopy for the visualization of cerebral neural networks at millimeters deep depth. J Biophotonics (2018). https://doi.org/10.1002/jbio.201800136

12.Rocca CJ et al. Transplantation of wild-type mouse hematopoietic stem and progenitor cells ameliorates deficits in a mouse model of Friedreich’s ataxia. Sci Transl Med (2017). http://stm.sciencemag.org/content/9/413/eaaj2347

13.Carus-Cadavieco M et al. Gamma oscillations organize top-down signalling to hypothalamus and enable food seeking. Nature (2017). http://dx.doi.org/10.1038/nature21066

14.Ye L et al. Wiring and molecular features of prefrontal ensembles representing distinct experiences. Cell (2016). http://dx.doi.org/10.1016/j.cell.2016.05.010

Organoids

1.Werschler N et al. Generation of Human Blood Vessel Organoids from Pluripotent Stem Cells. J Vis Exp (2023). http://dx.doi.org/10.3791/64715

2.Andersson-Rolf A et al. One-step generation of conditional and reversible gene knockouts. Nat Methods (2017). http://dx.doi.org/10.1038/nmeth.4156